rs31141121 SNP Detail

Summary

• ID
  rs31141121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30173445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTATAATCA TCCAATGTTT GCATCAAAAT TTTGCACTGT TATGACAACC ATTTGAAAGT
  ACTGACTCCT GTATTGTGGC TTCAACATGA TAAATTCCCA CTTCCAGAAG ACATCCAGCT
  GGTAAGACCA CTTCAGCTGC CAAAAGGATG CTTCATAATT CCCACATCTG GAATCGGTCC
  TCTGTCACAG CCTCATCACT AATTTTAACC CACGTTTTAA AAAAATCACT CTTATTTTTT
  TCCCCTAAAG TAAGACTGAA ACTTTTACCC GAAGGGATTT GTAAGCGGTT TCACTGGAAA
  R
  GGACAATGTC TTATGCTGAT AGTAAGTCTT TGGTTTCTCA ATGATTTGAC ATTATGAAAA
  AATTTTAGAT GGTTTTAAAA ACTTAATCCA AAGATATTTG ACTTATTTTA AATATCCATT
  TTCTGGTCTC CCCCCCCCCC TTGATTTATG TCAGAAAAAA AAATCTTCAA AAACTACTTA
  GCTTCATCTA GTTTCAAATC AAACCAATAT AAATAATGGG TAGAATTACT CACCTGCAGG
  GAATGTCATC CTAAATTTCC TGTTGCTGAC TGTGTAACCG TAAGCATGAC TGCTGTATTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45502348	mCV24747290	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss134729181	ENSMUSSNP6267069	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31141121					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30173445 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			44 bp distal