rs31140933 SNP Detail

Summary

• ID
  rs31140933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69663220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCCTTTTT TTGCTAAACA AGTTTCACTT TGACGTAGTT
  AACAGTCATA CATTGTTTTT GTTAAGATTT ACATCTTATT AGGTAGGACC ACTGACGTCT
  R
  AAATTTAGAT TTTCAAATAG TACAAAGGCC TTTGTATTAT AGATTGTTGA GAATGTAGCT
  GAAGAGATGA GATGGCCCAG TGGTTAGGAG AATTGGCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45503228	mCV24613579	ABI	CRAMUS_MOUSE	f	SNP		G	A				G
ss50978678	NES13928544	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G		G	A	G	A		G	A	A	G		G
ss135271368	ENSMUSSNP4553568	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320793813	CHEV_3_69559809	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31140933					SNP	G	G	A	A	G	G	G	G	A	G	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978678	NES13928544	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69663220 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	within coordinates
Rr375162	regulatory region 375162	within coordinates
Rr578222	regulatory region 578222	423 bp distal
Rr578223	regulatory region 578223	530 bp distal
Rr578224	regulatory region 578224	527 bp proximal
Rr578225	regulatory region 578225	764 bp proximal