rs31140474 SNP Detail

Summary

• ID
  rs31140474
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152655567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGTAGCT GTAGGACTGA
  TGGCTGCTGA GAGACAGAGT CCTTTCTCTA GGAGTGTGGC CACTGGTATA TCCCTATATT
  CCAGTGAGTG ACACTAAGTT CCTATGCATA TGCAGCCCTA ATAGGACTCA GTTAAATAAA
  ATTACGTGCT ATCTTCTGGG TGAAGTCCCT ATGATTTGAT ACCACTCAGG CCTCTGCCAG
  M
  AAGACAAACA TGCATGTTTT TCCACTCAAG TGAGACACGA GAGCAAACAA GCCAAGGTAG
  ACAACAGGCC AAAAATAAGA ACCTGAGAGA AATTTAGCAG GTGTGGAAGC ATTTCTAAAA
  GGAAATGGCG AGTGGCAAGT AATACTAAGT GCAGAGATAA AACCCGCTAT GATTAAAGAG
  TTGATAAAGG GTTACTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45502720	mCV24026825	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss136105104	ENSMUSSNP2539598	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31140474					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152655567 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587634	regulatory region 587634	420 bp proximal
Rr587635	regulatory region 587635	1175 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron