rs31140017 SNP Detail

Summary

• ID
  rs31140017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145122903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTAAC TAAGAAACCA
  CCAGCCAATT TACACAGTGC CTTCCTTCTA CAAATATTTA TGATCATTTG CATACTCAAG
  GGTGAGAGCA AACTGAACAG GACACTGCAC CCACTTCAAA GACCTCATGC AAGATTAGGA
  TGCCAATGTG AGTATTAAAG GGAAAAGGCT CTGCCTGCTG CAGAGATTAT CAGTAAGCCG
  R
  ATCCGGTGGA TCCAGAACAC TGGATAAAAT TCCTCAGTAG AAAAATCTTT AACTCTATTT
  CTATATAAAT ATGAACATCC CATTCTTGGG ATGTTGAACA AGATTGTCAA TGCCTTTTAA
  ATAACTGGCT CTGCTCTTCC TTGTGGTTAA ATCGAATTTT AAAGCGAGGC TGTGTATGAA
  GAGGGACCTT GTCCACATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45503111	mCV23543931	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss61093861	NES16613568	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G		A	A	G		A
ss136038413	ENSMUSSNP3010744	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss321008289	CHEV_3_145080112	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31140017					SNP	A	A	A	A	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093861	NES16613568	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145122903 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			766 bp proximal
Rr586780	regulatory region 586780			886 bp proximal