rs31137972 SNP Detail

Summary

• ID
  rs31137972
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101193367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC TCTGTGACTA TGCAGAAAGC
  K
  GTTGAACTGC GCACGGCAAA CGGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45502316	mCV22287082	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss135546262	ENSMUSSNP5641611	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss320851727	CHEV_3_101089974	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31137972					SNP	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101193367 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr397889	regulatory region 397889	1818 bp upstream
Rr581991	regulatory region 581991	within coordinates
Rr581992	regulatory region 581992	1878 bp proximal
Tssr30894	transcription start site region 30894	1894 bp downstream
Tssr30895	transcription start site region 30895	514 bp upstream
Tssr30896	transcription start site region 30896	589 bp upstream
Tssr30897	transcription start site region 30897	624 bp upstream
Tssr34780	transcription start site region 34780	1495 bp downstream
Tssr34781	transcription start site region 34781	1790 bp downstream
Tssr34782	transcription start site region 34782	1831 bp downstream
Tssr34783	transcription start site region 34783	1846 bp downstream