rs31133338 SNP Detail

Summary

• ID
  rs31133338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144259615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTAGAG ATTAGAGGAC
  AGCTGAGGTC CTTAGACTCA TAGCAATGCC CATATACATT GGGTCAGCTC ACTAATATAA
  CTATTAATAA TAACACAAGT ATATTATTTC ATATTTTCAA ACATCTTCAC ATTCACTGAT
  CTTTATAGCA ACTTCAAAAA GTAATGCTTA TGTATATTAA AAGAAAAATA TAATATATGA
  Y
  GACAGTGGCC AACTTATTAC TGTATAAAGA TAAATCTTCA AAGGTCACAG TAGGGAAAAA
  AACTGAAAAC CACTTTTTAG AAAATGAGGT AGTGGTCAAA GAATGAAGAG TCATGACAAA
  GAAAAGAGGA CTAAAGGGGA GTTAGGACAG TCATGAGGAA GAACAGACAA TAAATAGTCT
  CGGGATTAAT TAATCACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47020508	NES10843936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31133338					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47020508	NES10843936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144259615 () rs orientation: forward

Symbol	Name	Function Class
Gm46829	predicted gene, 46829	within coordinates
Hs2st1	heparan sulfate 2-O-sulfotransferase 1	Intron
Rr375851	regulatory region 375851	546 bp upstream
Rr586672	regulatory region 586672	201 bp proximal
Tssr35977	transcription start site region 35977	1469 bp downstream