rs31130638 SNP Detail

Summary

• ID
  rs31130638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30754385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA ACAATATGAA CCAACCAGTA
  Y
  CCCCAGAGCT CCCAGGGACT AAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45501212	mCV25261875	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss134732450	ENSMUSSNP5571521	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31130638					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30754385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13042	CpG island 13042	1127 bp proximal
Lrrc31	leucine rich repeat containing 31	393 bp upstream
Rr574816	regulatory region 574816	148 bp distal
Tssr32902	transcription start site region 32902	433 bp upstream
Tssr32903	transcription start site region 32903	364 bp upstream