rs31130344 SNP Detail

Summary

• ID
  rs31130344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144260312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAGCTA TTAAAACACA
  CCTAAGATCA TGTCAAGCCA GTCTTCCTAA TTAGCTCTTC TATGGAAGAA ACGATTAGCC
  TAACTTGGTG TTCTGCCAAG GATATACAAT ACACCAAGAA CATCCCACAT TTTATGAAAG
  ACCTGAGCAT GTTCCATTAA AAAGCATTAA AACTGCGCTG CAGTTGAAAA TGCTGGAAAT
  Y
  GGAGGCAGCT TCTTAGCATC CGAATGCAGG GCATCCACAA GTGTGGATCC TCTGATCAAG
  AGTCTCCGTG TCAAAGCTGA CTGCAGAACC ACTGTCCTCG CAGGTAAAGC AGCAAGTGAC
  AGCAGGGCTG AGGAAAGACT TTGCCCATGG TCTTTCCCTT GTGGGGGCGG GGCCTGCAGG
  TCCGAACTCA CTGTCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47020524	NES10843952	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31130344					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47020524	NES10843952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144260312 () rs orientation: forward

Symbol	Name	Function Class
Gm46829	predicted gene, 46829	within coordinates
Hs2st1	heparan sulfate 2-O-sulfotransferase 1	Intron
Rr375851	regulatory region 375851	within coordinates
Rr586672	regulatory region 586672	299 bp distal
Tssr35977	transcription start site region 35977	772 bp downstream