rs31130170 SNP Detail

Summary

• ID
  rs31130170
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95599562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATTATT AAAATACAGC
  TGGGAATAAA GCTGTTTCAT CCTTAAACTA AATGTTTTTC TTCCTCATTA AGAAACCCAT
  TTACAACTGT GTTCTCAGTA AGTTACAGGG CCTAAGTTCA CAATGGATAA ATCATGGCAA
  AATGAGGCAA TTATGAATTT AAGGGCAGAA GAATTTAGAA TGTCAAGTGG CATTAATTTA
  M
  GTGAGAAATA ACTTTTTTAT ACCTAATTTA ATTAATGCCA AGAGCAGGTA GAACTTTGTT
  TTTCAGGGAC AAACCCTGAA AATGGACGTG ACTTACACAA TAATCCTAGT CTGCCTGCTG
  CACTCCACAA CAACAAGTAA TATCGCTTAT CATTCTTAAG GTGTTATCAC TTACACATTA
  CACATAAAAC TGGGAGGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48020253	NES11900621	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	A	C	C	C	A		C	C	C	C
ss133409153	ENSMUSSNP2497649	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31130170					SNP	C	C	C	C	C	C	C	A	C	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48020253	NES11900621	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95599562 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635023	regulatory region 635023			285 bp distal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant