rs31127086 SNP Detail

Summary

• ID
  rs31127086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150870197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTATTCCC ATTTCACATA CCCTCCAGTA
  CAACTATGTG TCACGTCTCA GGCAAAGATC CACTGAAATG TTGTTCCTCT CAATGACATT
  TTCCTGCCAA AACTTAAGGA AACTTTACGG TGGAAAACAT TACAATGTTC TTCCAAGTCG
  Y
  AATCATTATA TACATTATAG CCGGATTAAC AGATTTCAGA AGGTAAGCGA AGAAAGTCAT
  TCATGCGCTA ACCATTCTTT GTTCCCCTTT AATAAATACG CCCCCCTCCC CCAGGAAAGG
  GGCTATTGTC TGGATGCAAG CATTCGAAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss49705593	NES13072133	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C		C
ss320052986	CHEV_1_152841576	CHEVERUD	SCREENING_POP	f	SNP						C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs31127086					SNP	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49705593	NES13072133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150870197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	653 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	1011 bp upstream
Rr420192	regulatory region 420192	1807 bp distal
Rr420193	regulatory region 420193	905 bp distal
Rr420194	regulatory region 420194	566 bp distal
Rr420195	regulatory region 420195	452 bp distal
Rr420196	regulatory region 420196	57 bp proximal
Tssr14167	transcription start site region 14167	1291 bp upstream
Tssr14168	transcription start site region 14168	997 bp upstream