rs31127084 SNP Detail

Summary

• ID
  rs31127084
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150870435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAATAAAT ACGCCCCCCT CCCCCAGGAA
  AGGGGCTATT GTCTGGATGC AAGCATTCGA AGTACAGCAC TTGGGCAGCT TTAAACTGGG
  TTTGAGTGTG TATGAGACCA CCCTCTAGCA TGGGGCAGCC TGAGAAAGGG CCAGCTCCCA
  S
  CAGCCTTTTA TAATCTCCAA CTGTCTTCTC TTTCAGACCC ACCATCTGTG GAACTTGATT
  TTATGATACC TATAAGTCAT GTCACTTAAA GGAAGCACAC GGGCCATTTG GGCTGGTGTG
  GGAACATGAG AGGAGAGGGA GGGAACATGT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss49705591	NES13072138	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C		C	G
ss320052990	CHEV_1_152841814	CHEVERUD	SCREENING_POP	f	SNP					C			G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs31127084					SNP	G	C	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49705591	NES13072138	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150870435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	891 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	1249 bp upstream
Rr420193	regulatory region 420193	1143 bp distal
Rr420194	regulatory region 420194	804 bp distal
Rr420195	regulatory region 420195	690 bp distal
Rr420196	regulatory region 420196	within coordinates
Tssr14167	transcription start site region 14167	1529 bp upstream
Tssr14168	transcription start site region 14168	1235 bp upstream