rs31127002 SNP Detail

Summary

• ID
  rs31127002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95493768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGAAT CAATTGTGGC
  TGCGCACCCC ACAGCCAACT GTTCTCTGAA TTTTGACCAG TTGTGGTTTT CGGTAAGGGT
  CTCTTGTCTC CAACAGGTAG TTTTAATGGC TGTTTTACTT CTTTAGAAGT AGAACTATAT
  TGGATTGACA GAGATACAAT GCCCTGAAGT TCTCTTATCT TTGTAAGGTA ACCATGAAGG
  Y
  CATGTCTAAG TTCTCACTTC AGATACAGCA GTTGAGGGCA TCTCCAGGTC CTTACTGTTT
  TGCCTAGCTC ATGCCTTTTG TAATCTCAGT TTCCGCCACA CACTGTGATT GGTAATGTGT
  TCTTCCACAC TGTGTGAGCT ACATGCAGGC CACAGTTCTT ATCAGCTGGC TAGAAGATAG
  TGACTTCTAC CCAGGCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48018762	NES11885992	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31127002					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48018762	NES11885992	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95493768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635013	regulatory region 635013			1802 bp proximal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant