rs31117039 SNP Detail

Summary

• ID
  rs31117039
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144103951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATTCAA TTGAGTCCAC
  TGGCTTCATC CGTGGACCAG CGAGGCTCCC TGTAGCATTT GAAGGTTCGC CCGTTTTGGC
  AGCTCTGAAG ATCAAACCCA GCACCTGCTA GGCTGACAGT GTAGCACTGA GCTCCATTCC
  AGTCCTGCTA TTTCAAGTCT TGAATCAAAA GCAGGCATTC CCTAATAGCA CACGGATAAT
  S
  CTGCAGAAGA AACCGGAAAT GTAGATAGAC TCTTCTGTTT CAGCAATAGA GGCTTTTATA
  GGTAAAGGGA TATGTGGGTT TGAGCCGAAG GGTGTTTGAC CAGGTCTCCC ACCGTTGCAC
  TGATTTCCAC ACAAGGCAAT GGTAAGAATG TGCCGCCACA GGCAGAGTCA CCCTAGTGGT
  ATCACAGTGC AATTGCATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47018674	NES10852478	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31117039					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018674	NES10852478	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144103951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1399 bp distal
Gm65349	predicted gene, 65349	1451 bp upstream
Rr586643	regulatory region 586643	1472 bp distal
Rr586644	regulatory region 586644	1302 bp distal
Rr586645	regulatory region 586645	1120 bp proximal
Rr586646	regulatory region 586646	1736 bp proximal