rs31115619 SNP Detail

Summary

• ID
  rs31115619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:64156972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAACTCA TAATTCCAAA
  TCCCAAATGG AGTTCAACAG CAATAGGAAG ACTTTTGGAA ATATTCCAGA ATGCAAAAGA
  AGCTGCTGCT TCCTTTTTTC TTCCTCCTCC CTCTCCTCCT CTTCCTCTTC CTCTTCTTCT
  TCCTTCTCTC CTTCCTCTTC CTCTTCTTTT CAATTTAAAA AAGGTCTGGA ATATCCCTGT
  Y
  TTCTCATTGG CTGTGAGTAG AAAAACCCAC TTCCCTAGTT CAGCCCAGAC TGATTCAGCT
  TTGAAATTCC TTACCACTTC TTTCAAATAC AATCATGGCC TTTATTACAT ATTTCCCTAC
  CTGGAAGCAG CTGTCTTGCT AGCATGCTCA CGGCCTCTCA TAACAGGAAT GCACACGCAG
  CTTGACGGGC TGTTTCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48017289	NES12041354	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31115619					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48017289	NES12041354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64156972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9130004J05Rik	RIKEN cDNA 9130004J05 gene			1331 bp downstream
Asap1	ArfGAP with SH3 domain, ankyrin repeat and PH domain1			Intron
				Noncoding-Transcript-Variant
Rr503380	regulatory region 503380			72 bp proximal
Rr503381	regulatory region 503381			786 bp proximal
Tssr134529	transcription start site region 134529			165 bp downstream