rs31115617 SNP Detail

Summary

• ID
  rs31115617
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:64156729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAGCCAA TCAGCACAAG
  CAAATGAGCA GAGTGCAAAG AAATTCTCTT TCAACCCAGG CTGAGAAAGG AAACCCAGTT
  TTACCCAAAC CCATCTATAC CACCTACACA CTAATATCCA ATCCCATTTC AAATAAGCAT
  CTGCCTTTAT GCTGGTTTCT GTGGCTATGT AATTCTACTT TATGGTATCA TTATTACTCA
  W
  TGTCAAAATA AAAAATACAC AATTAATTTC ACCTCAAGAT TTAGAAAACT CATAATTCCA
  AATCCCAAAT GGAGTTCAAC AGCAATAGGA AGACTTTTGG AAATATTCCA GAATGCAAAA
  GAAGCTGCTG CTTCCTTTTT TCTTCCTCCT CCCTCTCCTC CTCTTCCTCT TCCTCTTCTT
  CTTCCTTCTC TCCTTCCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39361020	mCV22698177	ABI	CRAMUS_MOUSE	f	SNP		A					T		T
ss48017287	NES12041380	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	T	T		T	T	T	T	T	T	T	T	T
ss148017182	ENSMUSSNP3203107	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31115617					SNP	T	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48017287	NES12041380	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64156729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9130004J05Rik	RIKEN cDNA 9130004J05 gene			1574 bp downstream
Asap1	ArfGAP with SH3 domain, ankyrin repeat and PH domain1			Intron
				Noncoding-Transcript-Variant
Rr503380	regulatory region 503380			315 bp proximal
Rr503381	regulatory region 503381			1029 bp proximal
Tssr134529	transcription start site region 134529			408 bp downstream