rs31114777 SNP Detail

Summary

• ID
  rs31114777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:64156119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTTCTC AGCCTTAGTT
  TCCTCATTTA CAACAAAAAG AGTTGAGCCA CTGTCGGGCT TTTATGGGGA AACTATAAAG
  CAAACAGGTG GAACAATGAC TGCTGGTACC AGAACCCAGT GAAAATGTGT CCAACCCCCA
  AGACTGTGGA GTTGTCAACA ACACAAACAC AGCATTTACA ACACACACCT ACATGTACTG
  Y
  ACATACTTAC AAACGCACAC AGTTTATCAC ATGGGGAAGG ATCAAGAACC CACAAAGGCT
  GGAAAACCAG ACAACAAAGG TCCAACTAGA ATACCACAGA CAGAATTCTT TCTGTGCTTG
  CTCCTAGCCT GGGTTTGCTT AGTTAGCACT GTTGAATCTA GAGACAATGA CAAAATACAC
  AGGATGGCAG ATTTTAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48017277	NES12041375	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31114777					SNP	T	T	T	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48017277	NES12041375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64156119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asap1	ArfGAP with SH3 domain, ankyrin repeat and PH domain1			Intron
				Noncoding-Transcript-Variant
Rr503380	regulatory region 503380			925 bp proximal
Rr503381	regulatory region 503381			1639 bp proximal
Tssr134529	transcription start site region 134529			1018 bp downstream