rs31113111 SNP Detail

Summary

• ID
  rs31113111
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:64155354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATGTAT GTAAACTGGG
  ATGACAGTAA TAGAAGATTC CAACAAGTAA TCCACATTTT ACTTTATGAT GTCTTATGGA
  AATTCTGCTA GTCTTTACAT ACAATCCTTC TGGAACCTAT AAAAAGTACT CCAAATGGGA
  ATTTTTGCAA GAAGTCAAGA ACACTGAATT CAAAAGTACA GCAAGCTGGG GTATTCCTGA
  S
  AGTATGAAGA CCCACTTCTA TTTCTAACCT TACATTTTTT TCTTTTATTT TTCTGAAATT
  ATGTGCCCAG AATGGGCTAT CGCCTCATTT AGACCTGGGT TTAAGACCTT CCCGTACACA
  TAAAGGTTTC TAGTGCACAG TTCCCCTGCT GCTGAACAGG GCTAGTACGT CCCAAGTGCA
  GGCAGAACAG AACCTAGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48017261	NES12041466	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G		C	C	G	C
ss148017132	ENSMUSSNP6289337	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31113111					SNP	C	C	C	C	C	C	C	C	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48017261	NES12041466	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64155354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asap1	ArfGAP with SH3 domain, ankyrin repeat and PH domain1			Intron
				Noncoding-Transcript-Variant
Rr503380	regulatory region 503380			1690 bp proximal
Tssr134529	transcription start site region 134529			1783 bp downstream