rs31109984 SNP Detail

Summary

• ID
  rs31109984
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61264174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAATTACAAG GGTCACATAC GTACTTCTAC TAAGGGTGCA GACACTTGAG AGATGTATAG
  TTCATTTTAT TTTATTTTTT AAAGATTTAT TTATTTATTA TATGCAAGTA CACTGTAGCT
  GTCTTCAGAC ACCCCAGAAA AGGGCATCAG ATCTCATTAC AGATGGTTGT GAGCCACCAT
  GTGGTTGCTG AGATTTGAAC TCAGAACCTT TGGAAGAGTA GTCACTGTTC TAACCCACTG
  AGCCATCTAT CTCTCCAGCC AGTATAGTTC ATTTTATAAC CATGTATTAT ACATGTTGCA
  M
  AAAAAAAAAA AAAAAAAAAC CCTGCAGACA TTTCAATTGA TTTTGATCTG ACATACTTGA
  AAGGAATTGA GAAAGTGAGT TGGGGTGTTC ATAAATTCAA GTATCCAACA TTAATAACCT
  AGCATCTTTG TGCCATGTGC AGCACAAACA TGTGACAAGC AGCTTTATTG CTTCTGGGAC
  TCTCCACCCA TCCACTCATA CCTGGCTGCT CCCCTTTCCA GCAGGCACAT TGCCATTTTT
  TAGTGATGCT GAGGTTGTTT GCAGTGCATT GATTTTGGGG ATGTCAGCTC ATCTTCGGGT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45500127	mCV25111454	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31109984					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61264174 () rs orientation: forward

Symbol	Name	Function Class
B430305J03Rik	RIKEN cDNA B430305J03 gene	1796 bp downstream
Gm37696	predicted gene, 37696	1796 bp downstream
Rr397695	regulatory region 397695	1564 bp upstream
Rr577488	regulatory region 577488	1451 bp proximal