rs31101903 SNP Detail

Summary

• ID
  rs31101903
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19363778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTCCAT TAAAGACCTT
  TAATTACTAT TATTGAAAAC CTTCTCCTGA GTGCTTTAAT ATATTTTGAT ATTATTCTGG
  AACTTTAAAA CGTGTTAAGC AATAATAAAA AATACAGTTC ACAAACTACA CTTCAAAGTA
  ACAAAAGTAT TATTTGAAAT TCCACTTAGT ATTTTACACT GAATTCTTTA GCATACTACC
  W
  TGTATCAGAA GAGTCTGACC TTAAATAAAG AAGAACTCTT TGAAAGGAAA CTCACACAGA
  ACCTCCTGCT CTATCTTGCA GGCCAAAAAG GAAAAAGAAA AAAAGGCAAA TGACAAATAG
  AATTTACTGG CGATCTACTA TAAGCAAAAT CTCTAAAAGA TGCTGTCCAT TCTAACTGTC
  TTTAAAATTT CCTTTCTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45498768	mCV24212198	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss134666618	ENSMUSSNP291760	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31101903					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19363778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
3110037C07Rik	RIKEN cDNA 3110037C07 gene			1268 bp upstream
Cpgi13002	CpG island 13002			830 bp proximal
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573969	regulatory region 573969			277 bp proximal
Rr573970	regulatory region 573970			1698 bp proximal
Tssr28510	transcription start site region 28510			1078 bp upstream
Tssr28511	transcription start site region 28511			1234 bp upstream
Tssr28512	transcription start site region 28512			1826 bp upstream
Tssr28513	transcription start site region 28513			1867 bp upstream
Tssr32696	transcription start site region 32696			1629 bp downstream
Tssr32697	transcription start site region 32697			1655 bp downstream
Tssr32698	transcription start site region 32698			1719 bp downstream
Tssr32699	transcription start site region 32699			1735 bp downstream
Tssr32700	transcription start site region 32700			1775 bp downstream