rs31101895 SNP Detail

Summary

• ID
  rs31101895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131791378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA AGAAGCAGCA GCTGGGGAGA
  R
  CCCTGTGCGC GGTTAAGGGA GGATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45498757	mCV23619676	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss135908762	ENSMUSSNP5377012	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss320968638	CHEV_3_131748581	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31101895					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131791378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13841	CpG island 13841	within coordinates
Cpgi13842	CpG island 13842	1349 bp proximal
Dkk2	dickkopf WNT signaling pathway inhibitor 2	mRNA-UTR
Rr585410	regulatory region 585410	1557 bp distal
Rr585411	regulatory region 585411	1371 bp distal
Rr585412	regulatory region 585412	315 bp distal
Rr585413	regulatory region 585413	within coordinates
Rr585414	regulatory region 585414	1563 bp proximal
Rr585415	regulatory region 585415	1829 bp proximal
Tssr31747	transcription start site region 31747	318 bp downstream
Tssr31748	transcription start site region 31748	162 bp downstream
Tssr31749	transcription start site region 31749	162 bp upstream