rs31100769 SNP Detail

Summary

• ID
  rs31100769
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90564753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTAGTGTTT CTAGGTAGGT AGCAAAGCAT GCAGATATCT ATCTGACTTG GAGACGGTCC
  TGCTGGAGAT GTGTGCATGC ATGGGAACAG GTAGACTTTC CCCTTAAGGA GCTCTGGGTA
  TGGAGAAAGA AGACAGTGCC TTGCCTTCAG GAAGCCTATA CAAGCATCTC TTATGGAGGC
  TTACAGTGCA TTTGGGAAGT CAGCACAGAT ACAGGCTGTA TGTGAGTGAA GTGGTTCTGG
  GGACTCCAGG CTGCTGGACT TCAATTCAGT AATTATTTAT AGTTCTCTTT TGAAAAGACT
  W
  TTTTTTTTTG GTTTCTGTAC CCATGCCACT CTAGGTTCAG TAACCCAAGG TGTCCATTAA
  CACCAGTGCC TCTTCAGCCT GATTTTGTAG TACGTGGTGA TTTTGTCATA GGGGGACCAC
  ACTGCTGTAA TCCCCTTCAA CCCCAGCAGG AGGAGTCTGG AGGATGCACA GTGTGTGTTT
  ATGATCCTCT TTGTGTTTGG CAGGGCCGCA GGCAGCCATA CTACATCACA GAGCTGTTCC
  GGGCAGCTGA CAAAAACAAG GACAACCAGA TCTGCTTTGA TGAGTTCCTG TACATCTTGG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45498749	mCV24984332	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31100769					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90564753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57853	predicted gene, 57853			Intron
				Noncoding-Transcript-Variant
S100a7a	S100 calcium binding protein A7A			Intron
Tssr34247	transcription start site region 34247			1977 bp downstream
Tssr34248	transcription start site region 34248			1995 bp downstream