rs31100670 SNP Detail

Summary

• ID
  rs31100670
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120899275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAAATGTT TGTCAGAGAG GCAGTGGCTG TCCTTTCTCC
  CACCGTGTGA GCAGCCTTAG GTTGTCCAAA GGCTGGAGAA AATACTGCAC TTTGTAAGCC
  K
  CACCCAGAAT TAAGTGTGCA CTCCAAAAAG GAGTCAGGCC AAGGGACTCA AGTCGAGCTC
  TGCTTTCTCT GATGTCAGCT TTTTCTTAGC AGGCCGGCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45499736	mCV23386856	ABI	CRAMUS_MOUSE	f	SNP	T		T					T		G
ss60441578	NES15944816	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		G	G	T	T	G	T	T	G	T
ss135713509	ENSMUSSNP4723366	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31100670					SNP	T	T	T	T	T	T	T	T	G	G	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60441578	NES15944816	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120899275 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	342 bp upstream
Rr397968	regulatory region 397968	484 bp downstream
Rr584004	regulatory region 584004	34 bp distal
Rr584005	regulatory region 584005	598 bp distal