rs31100668 SNP Detail

Summary

• ID
  rs31100668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36118004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACATTGG TTTGCTACTC
  CTACTAGTTT GTGCGACCAT TGGCTTAGCA TATTTTGCAA GGAAGATAAC ACTGTAGATC
  AAAGGTTTTG TGGCTATGTT GTTGTATGTG TTTCTCTTTT GGTAGCCTGC AGAGTAACTT
  TCCATACTCA AGACTTTAGA ACATAGGGGT GAAGGTTCTA TATTGGCATC CACTAGACCT
  Y
  CCCAAGTGTG GGTGTTGTCT TCAGCAATGG ACTCTTTTTG TCAGTTTGCA GAGAGCAAAC
  TATTGTATTG GCAACAGCCT GGGGTGTTTG GAGCATTTCC ATGGAAGCTC TTTGGCCAAC
  AACTCAATTG GGTATAACCC AGGCTTGCTA CTGGAAGCTC TGTTTGGTAA CGAGAGATGG
  AGAGTTACCT CCCCATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45499733	mCV22322142	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss134777607	ENSMUSSNP6539330	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31100668					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36118004 () rs orientation: forward

Symbol	Name	Function Class
Rr397642	regulatory region 397642	691 bp upstream
Rr575304	regulatory region 575304	694 bp proximal
Rr575305	regulatory region 575305	1326 bp proximal
Rr575306	regulatory region 575306	1506 bp proximal
Rr575307	regulatory region 575307	1634 bp proximal