rs31099887 SNP Detail

Summary

• ID
  rs31099887
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191312537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTTATA
  GCAAATAAAT AAAGTCTCAA AATATTTAAA ATTATAGCTC TTAACATCTA TATATAATGC
  AGACTAAGGG TTGAGGGTCA TCTTTTTTTT TTTTTTTTTT CGAGACAGGG TTTCTCTGTA
  TAGCCCTGGC TGTCCTGGAG CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC
  S
  CCTGCCTCTG CCTCCCGAGT GCTGGGATTA AAGGTGTGCG CCACCACACC CGGCTGAGGG
  TCATCTTTTA GTTAGGTGTT TTTAGTCTTT CCAGAATCAA TGTTAAAAAT TTGATTTCCA
  CATTGAGCTT GGTCACTATT CTATTGTTGT GAAGAGACCT CATGACCAAG GCAACTCTTA
  CAAAGAAAGC ATTTAATTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss44995844	mCV23578423	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss146508256	ENSMUSSNP5761	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs31099887					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191312537 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints7	integrator complex subunit 7			Intron
				Noncoding-Transcript-Variant
Rr426190	regulatory region 426190			519 bp distal