rs31099865 SNP Detail

Summary

• ID
  rs31099865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104547202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT TTTAAATGAG TATATGCTGA
  Y
  GTGTGAGATT AGTAATTGTA CGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45499018	mCV24812777	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss135570107	ENSMUSSNP2898688	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31099865					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104547202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	294 bp distal
Gm65697	predicted gene, 65697	1404 bp upstream
Rr367518	regulatory region 367518	1413 bp downstream
Rr582556	regulatory region 582556	1415 bp distal
Rr582557	regulatory region 582557	1208 bp distal
Rr582558	regulatory region 582558	1298 bp distal
Rr582559	regulatory region 582559	within coordinates
Rr582560	regulatory region 582560	651 bp distal
Rr582561	regulatory region 582561	1020 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron
Tssr31045	transcription start site region 31045	1211 bp downstream
Tssr34884	transcription start site region 34884	1444 bp upstream
Tssr34885	transcription start site region 34885	1344 bp upstream