rs31097920 SNP Detail

Summary

• ID
  rs31097920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141307434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCTCTTC AGCCCCCTCC TCTCATGAGC
  TTACAAAAAT AGTAGGGGAT CTGAGCTAAT GCTGAAGCAT CTGCTGAACT CTAAAGGATG
  CTTCAATGGA TGCACAAGAG AGAGGAACAC AGGGAGTCCT TGGATGAAAT TTGTTGGCct
  Y
  tctctctgtc tctctgtctg tttctgtctc tctgtctctc tctctctgtc tctatctctc
  tctctttctc tctctctctc tctctgtctc tctctctccc tccctccttc cctccctcct
  cccctccctc cctccctctc tcAATTAAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45499701	mCV24247870	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss136005507	ENSMUSSNP2528355	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss320993696	CHEV_3_141264637	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31097920					SNP	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141307434 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586341	regulatory region 586341			27 bp distal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant