rs31096992 SNP Detail

Summary

• ID
  rs31096992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52893064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTATGTT CTAGACTTCT
  TGGTCCCGTA TAAGTATATC TGCTTAGTAG TTTCCTTCAA GACCAAATGT CCAATCAAAC
  TCTCTGTTGA AAGATAAAAC TTGGGACAAA CAAGTTCCAG TAGAGCACTG TGCACACAGA
  GGGACTCCCT GCTGGAGCCC CGCCTCCCTG TCTCCTCCCT GCTGGAGCCC CGCCTCCCTG
  Y
  CTCCTCACTG CTGAAGCCCC GCCTCCCTGT CTCCTCCCTG CTGGAGCCCC GCCTCCCTGT
  CTCCTCCCTG CTGGAGCCCC GCCTCCCTGT CTCCTCCCTG CTGGAGCCCC GCCTCCCTGT
  CTCCTCCCTG CTGGAGCCCC GCCTCCCTGC CACCTCACTG CTGAAGCTCC AACCTCCTTG
  TCTTCTTACT GCTGTACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss45499693	mCV22817318	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss135180529	ENSMUSSNP2409322	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs31096992					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52893064 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	within coordinates
Rr576615	regulatory region 576615	1332 bp distal
Rr576616	regulatory region 576616	within coordinates