rs31095658 SNP Detail

Summary

• ID
  rs31095658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135394027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGTTTT CAAGCCTCTC
  CCCAGACCTT CCAAGACTGC CCTTCTTCCA AGCATTCCCC CTGAGGCTGA GTGCCTGCAT
  TTGGCTAACA GCCTCAAATC TCTGTGCTCT AACAGAAGGC ATCTGCTAGG ATACATCTGT
  TCTTACTCTT GGACCTGCTC ACCTCTAACA CGACAATCAG TTTCAGTACT GACGAGAGGT
  R
  CACAAGCGCA AGTCACAATC ACCAGAGGCA GACGAAAGCG CCCAGGTAGT CCATCAGCTC
  TAGTCAGACA GAAAGGCAGG CACAAAGTAC GGTAGAGTCT TCTAGCACTA AAATCCTATT
  TGACCTTCTC CTGGGCCTTT TCTTCTAACA CAGCCACACT ACCTTATATA ATTCTTGTTG
  TAAGCAGAAA GTTGGCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45498072	mCV25339240	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31095658					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135394027 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr398044	regulatory region 398044	1871 bp upstream
Rr585765	regulatory region 585765	1424 bp distal
Rr585766	regulatory region 585766	within coordinates
Tssr31841	transcription start site region 31841	854 bp upstream
Tssr31842	transcription start site region 31842	873 bp upstream
Tssr31843	transcription start site region 31843	885 bp upstream
Tssr31844	transcription start site region 31844	907 bp upstream
Tssr31845	transcription start site region 31845	968 bp upstream
Tssr35822	transcription start site region 35822	338 bp upstream
Tssr35823	transcription start site region 35823	989 bp downstream
Tssr35824	transcription start site region 35824	1512 bp downstream