rs31095209 SNP Detail

Summary

• ID
  rs31095209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160348799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAATTTC ATAGCATGTA
  CATTAGTCAC AAGCTATTTC TAATTATTGG TAGCCATTTG TGCAGGATAT GGGATATTAG
  GAAAAGAACA TTTTTTCCTT TCTTAAAATT AACTTTTAGC TCTCAGTTCT CCCTTTGGTT
  TTCCCTCAGA AAACCTGTAG GAGAGATGTG TAACTGCAGA TAAACAGGTT TTTTATATTT
  Y
  CAGTTGTGAG CCTCACCATT AACAGCTGAG CCATTTCTAC AGCCTAGTGG GATAGGTTTT
  AACTAGTGTT ACCATTACAA TGATTTAAGT GTCAATTACA CTTAAATGTC AATTAGCTTA
  GCAAGAACAA AGCTCTAAGA CTATGGAGAT GACTCGATCC ATAAAGCATT TGCTGCGCAA
  GCATGGGGAC CTGAGTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44995558	mCV24556251	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145892973	ENSMUSSNP283522	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31095209					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160348799 () rs orientation: forward

Symbol	Name	Function Class
Rabgap1l	RAB GTPase activating protein 1-like	Intron
Rr421675	regulatory region 421675	191 bp distal