rs31094254 SNP Detail

Summary

• ID
  rs31094254
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101004811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC ACCCTGGTGG GTTAACGGGT
  W
  CTTAATCCCA TTAATTTTAG AAACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
ss45497549	mCV23027357	ABI	CRAMUS_MOUSE	f	SNP		A					A		T
ss46811384	NES10724110	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A		A	T	A	A	A
ss135544300	ENSMUSSNP5610485	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
rs31094254					SNP	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811384	NES10724110	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101004811 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581955	regulatory region 581955	1163 bp distal
Rr581956	regulatory region 581956	within coordinates
Rr581957	regulatory region 581957	602 bp proximal
Rr581958	regulatory region 581958	786 bp proximal
Tssr34769	transcription start site region 34769	425 bp upstream