rs31094047 SNP Detail

Summary

• ID
  rs31094047
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125196275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTCAAA GTCCTCACAA
  TTAAAAAATG GTTAAGTATC TTCATATCAA AGCTGGTGCT AGAGTAATAA TGGACTTGAT
  CATGTTATTT CCTTTGTTAT GATTCTACAC TGTCCATGGC CATAACCCTG ACAAGGCTGT
  GGATCCTGCT TCAAGGTTCT ATTTGATAGT TTTGCAGTGA GAATCATGGA GCTACCATTT
  W
  ATTCCAACAA GTTCAACCGT TTGTATATAG CACTGCTTCT GTTGGCCTTT GAAATAGGAA
  CGCAGCAAGA CTGTAATGGG TTGAACAATT TGCAATAATG TTTCTTCCTC AATTATGCAA
  TTTTCCAAAA ACTTAAAATG CTAAATAAAT AATGAAATTA AAAAACAAAC AAGCAAAACA
  ACAAAAAAGC AAAACTATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45498136	mCV24033630	ABI	CRAMUS_MOUSE	f	SNP		T					A		A
ss61078018	NES16589245	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	T		A	A	A	A		A	A	A	T		A
ss320936157	CHEV_3_125105544	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31094047					SNP	A	T	A	T	A	T	A	A	A	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078018	NES16589245	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125196275 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	1450 bp upstream
Rr584608	regulatory region 584608	966 bp proximal
Rr584609	regulatory region 584609	1461 bp proximal
Tssr31558	transcription start site region 31558	1446 bp upstream
Tssr31559	transcription start site region 31559	1699 bp upstream