rs31092511 SNP Detail

Summary

• ID
  rs31092511
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27243304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACAGTT TTGTATGCAA
  CCTCCAGACT TGGAATGAAG ACCACTATGT CACAGAAGTT TGAGGGGTCA GTAACCATAG
  TGATATGATT AGCTAATTCA GTTGGATTTC CTACAAAGAC AAGGCAGCAG AAAGGCTTCA
  CCTTCAGGGA GGTATTTACT CTGTATTTAT TCTAATAGGT GAGCAGGTTG ACTTGTGTTC
  W
  GCAGACAGCA CTTGGGAAAT GGTAAGGTCA AGTTGACTCA GTTACCAGAT GTGTAAGGGA
  ATAAAATATT AAATAGACCC AGCTTAATTT TTTCTAGCAC TTCGGCAAAT CCAGCCCTGA
  GCACAGAGAG GGTGTCCCTC TTATGTGATC TTTTGTGAGA AAACCTATCC TGTTTCCAAA
  CTTGGCCTGC AGACGTTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45498221	mCV27552863	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss134702614	ENSMUSSNP2140723	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31092511					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27243304 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			57 bp upstream
Rr574359	regulatory region 574359			379 bp distal
Rr574360	regulatory region 574360			479 bp proximal
Rr574361	regulatory region 574361			1628 bp proximal
Tssr28607	transcription start site region 28607			746 bp downstream
Tssr28608	transcription start site region 28608			714 bp downstream
Tssr28609	transcription start site region 28609			697 bp downstream