rs31092193 SNP Detail

Summary

• ID
  rs31092193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145910105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTGGGG AAAGGCGTTT
  TCAAATCTGA GGGTTTGGAT ACCCAAGCTG TCTCCTTCCT AGCCCTTCTG TTCTCTGCCT
  TTGTGGGGGA GATGCTTCAT TGTAACAGAA TGGCAGAATA GCCGGAGCTT GCTTTGTGCA
  AGGAAGGACT TCTGTTTTCA AATAACAACT TGTTAAGGCT TTGAACTCAA ATGCTGCTGG
  Y
  GCCGATGGGT AGCTGAATAT CGGTTCTTAC CTTTGTGGGG GAGTCAAAGG GCCCTTAGAA
  GCTCCAAGCC TAAGGCTCAG TTGCTTGGTG ATTTAGGTAT GTTAGGTTCC TCTGGGTCTT
  GGAATCCTTA TCTGTAAGGA CACAGATAAT AAACTAGAGG GGGCAGAGAG GCCCAGAAAG
  TGTTCAGGGT CACACAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45496572	mCV22760614	ABI	CRAMUS_MOUSE	f	SNP	T	T						C
ss47025410	NES10852904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	C		T	T	C		C
ss136042579	ENSMUSSNP2178968	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss321009686	CHEV_3_145867314	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31092193					SNP	T	T	T	T	T	T	T	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47025410	NES10852904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145910105 () rs orientation: forward

Symbol	Name	Function Class
Rr586967	regulatory region 586967	144 bp proximal
Rr586968	regulatory region 586968	912 bp proximal