rs31091995 SNP Detail

Summary

• ID
  rs31091995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:186958832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT TCAGAGGTCA GACCTTGTGC
  Y
  GCGTGGGGCT TGGTGTGTTG ATCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss44995324	mCV23999411	ABI	CRAMUS_MOUSE	f	SNP		C	C				T		C
ss46747207	NES10638057	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	T		C	C	C		C	C	C		T
ss146461109	ENSMUSSNP2588377	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss320184822	CHEV_1_189050514	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31091995					SNP	C	C	C	C	T	T	T	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46747207	NES10638057	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:186958832 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpatch2	G patch domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr425579	regulatory region 425579			within coordinates
Rr425580	regulatory region 425580			236 bp proximal
Rr425581	regulatory region 425581			1910 bp proximal