rs31091668 SNP Detail

Summary

• ID
  rs31091668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAAATCC AATTTTATTG
  ATGGCTCTCT TGAGCCTGGC ATTAAAGCCC ATGTGGCCTC TATGGTAGGT GGTTGTTGCT
  GGGGACAGAG TCTGCTTTTT TCTTTCTGAG CTGCTCAGCA AAGGTTCCTT CTGGGGACAC
  TATGGGTGAG TAGGCTTGGC AGGTTCTCTT GAACCCTCTC TTCTCAGAGC TTGAACTTAC
  R
  AAAGGATTTC TGTTGTCATT TCTCTATAGG AAACTTCTGA AATAAAGTCC AGATTAAGTT
  TTTCTGTTCT TTCAAGGGTG CAGTTTCTGT CTTATAGGCT TCCCCATGCC CATAGCTGGG
  GAAGGGCACA TCTCCTATCA GAAAGTTATA TGCCTTACTT CTCCTTTAAC CTAGGTACCC
  CCATGCACCC ATTGTCCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45496364	mCV25299775	ABI	CRAMUS_MOUSE	f	SNP		A	G						A
ss46825078	NES10846318	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	A	A	A	A	A
ss134667131	ENSMUSSNP6023707	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31091668					SNP	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825078	NES10846318	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402064 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	1040 bp downstream
Rr573976	regulatory region 573976	345 bp proximal
Rr573977	regulatory region 573977	1989 bp proximal