rs31091575 SNP Detail

Summary

• ID
  rs31091575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87082629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCA GTTAACTCTT CCTTTGTTCA
  Y
  CCCAGACATT TATCTATCCG GAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45497152	mCV24904427	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss135455079	ENSMUSSNP2436491	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320831254	CHEV_3_86979244	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31091575					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87082629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	285 bp distal
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	575 bp upstream
Rr579455	regulatory region 579455	1155 bp distal
Rr579456	regulatory region 579456	783 bp distal
Rr579457	regulatory region 579457	85 bp distal
Rr579458	regulatory region 579458	417 bp proximal
Rr579459	regulatory region 579459	503 bp proximal
Tssr33927	transcription start site region 33927	837 bp upstream
Tssr33928	transcription start site region 33928	744 bp upstream
Tssr33929	transcription start site region 33929	667 bp upstream
Tssr33930	transcription start site region 33930	643 bp upstream