rs31090590 SNP Detail

Summary

• ID
  rs31090590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151774223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTATTTG TTCTGTTTCT
  ATGGAGAACC TGGGTAATAT TGGGTTCATT TGTGGGGGAG ACTAGGTAGT TAGCAATAGG
  ATTTATATGA TATCATCAAG ACTGGGGAAT TTGGGCGCTC TTCCAGGGGA AAGGGAGAAA
  TGGAGAATGA GCATATTCTA GCCATGAGGA GAGGCAGGAT AGGACACAAC ACAAAGAATA
  Y
  GTAGTCCAAT TTGGCAGAAA TATCATTAAA GGGAGATGCA AAGTGGAGGG AGACTGCAGT
  ATAAAGGAAA TAATAATATT TCAATAAATC AGTTGTTGCA AAGTTTTACT ATAAAATTAC
  ACCAATTTTT GTGCTGATAT GTGTGAAAGA CATTGTCATA TTCTTTTCTT TTCTTTTCCT
  TTCTTTTGAG ACTGGGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45498193	mCV24211731	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss136100502	ENSMUSSNP6073879	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss321027911	CHEV_3_151731550	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31090590					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151774223 () rs orientation: forward

Symbol	Name	Function Class
Gm64437	predicted gene, 64437	1438 bp upstream
Rr587440	regulatory region 587440	1646 bp distal
Rr587441	regulatory region 587441	1720 bp distal