rs31090444 SNP Detail

Summary

• ID
  rs31090444
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52746547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACGCTTT ACACATACAG
  AGCACACCCT ATGTATGATA TGAAAATAGT ATCTGAAAGC AAGGCAGCAT GGACTATGTC
  CTGCATTAAA CGGATTCACT GTGAGGCAGG AGAAGTCTTA TCCCAGCCAG GAGCACACAG
  TCATGGGACT GGTCCTGACA GGAACGTAGA CCCAGCTATG TACAGATGAA CTGATTGATG
  W
  TGGGGGTGGG GCTAAGAAAG AACAGCTTCT AATATCAGAT TTGAATAAGA TCCTGGTCTG
  AACAGCTTTA AGGCATCTGT GTGCACATGA TCAACGGGGT CCGTGGTCAC AAAACTCTTG
  CAGAAACGGA GGTAGAATCA TTTTGAGCCT GTGGAAGCAG TCTACATCCC TGCAGGCTAG
  CCTAGCTCCT GAGACATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45495972	mCV24465364	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss135178663	ENSMUSSNP119868	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320765404	CHEV_3_52643048	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31090444					SNP	T	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52746547 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	within coordinates
Gm65967	predicted gene, 65967	861 bp upstream
Rr576589	regulatory region 576589	1035 bp proximal
Rr576590	regulatory region 576590	1256 bp proximal