rs31090440 SNP Detail

Summary

• ID
  rs31090440
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689113 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GTAGTATTCA ATTGTGTAAA TGTACCACGT TTTCTGTATC TGTTCCTCTG TTGAGGGACA
  TCTGGGTTCT TTCCAGCCTC TGGCTACTAT AAATAAGACT GCTATGAACA TAGTGGGGCA
  TGTGTCCATA TTACATGTTG GAGCATCTTC TGGGTATATG CCCAGGAGTG TTATAACTGG
  GTCCTCAGGT AGTACTATAA CCAATTTTCT GAGGAACCAC CAGACTGACT TCCAGAGTGG
  TTGTACCAGC TTGTAATCCT ACCAGCAATG AAGGAGTGTT CTTCTTTCTC CACATCCTCG
  M
  CAGCATCTGC TGTCACCTGA GTTTTTGATC TTAGCCATTC TGATTGGTGT GAGGTGGAAT
  CTCAGGGTTG TTTTGATTTG CATTTCCCTG ATGACTTAGG ATTTCTTTAG GTGCTTCTCA
  GCCATTCGAG TTTCCTCAGT TGAGAATTTT CTGTTTAGTT CTGTTCCCCA TTTTTTAAAA
  TAGGGTTATT TGTTTCTCTA GAGTCTAACT TATTAAATTC TTTGTATATA TTGGATGGAT
  ATTAGCCCTC TATTGGATGA ATGGTTGGTA AAGATATTTT CCCAATCTGT TGGTTGCCAT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45497049	mCV22835945	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31090440					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689113 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1792 bp proximal