rs31090380 SNP Detail

Summary

• ID
  rs31090380
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87070599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGC AGTCTGGGGC TTTCAACTCT
  S
  AAGCAGGAAG TATGGGAAGA TCTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45497415	mCV24904819	ABI	CRAMUS_MOUSE	f	SNP		C
ss46739117	NES10741641	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C		G	C	C	G
ss135454873	ENSMUSSNP6795611	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320831182	CHEV_3_86967214	CHEVERUD	SCREENING_POP	f	SNP							C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31090380					SNP	C	C	C	C	G	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739117	NES10741641	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87070599 () rs orientation: forward

Symbol	Name	Function Class
Gm37855	predicted gene, 37855	837 bp downstream
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr2003	regulatory region 2003	1580 bp proximal
Rr579449	regulatory region 579449	1611 bp distal
Rr579450	regulatory region 579450	within coordinates
Rr579451	regulatory region 579451	870 bp proximal
Rr579452	regulatory region 579452	1833 bp proximal