rs31089707 SNP Detail

Summary

• ID
  rs31089707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58434052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAGATGTG GCTTAAGGTG GCGACAGTGA GCAGGATAAT
  GATAGTCTAA TGTTTTCGAT TGAAACAGCT GTGAGACAGT ATTTAAGAAG TAGAACATGA
  R
  AAGACGCTAG GAATTTAAAG CTGACACATA TTGTGGTGCT TAAACAACAA CAACAAACTT
  GGACAACACT GGGAAAGGTG CTATACTATG TTATGGCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45496635	mCV24915796	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss135207065	ENSMUSSNP6610695	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320783122	CHEV_3_58330553	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31089707					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58434052 () rs orientation: forward

Symbol	Name	Function Class
6720482G16Rik	RIKEN cDNA 6720482G16 gene	299 bp upstream
Cpgi13201	CpG island 13201	359 bp distal
Eif2a	eukaryotic translation initiation factor 2A	Intron
Rr397681	regulatory region 397681	577 bp downstream
Rr577247	regulatory region 577247	800 bp distal
Rr577248	regulatory region 577248	1024 bp distal
Rr577249	regulatory region 577249	249 bp distal
Serp1	stress-associated endoplasmic reticulum protein 1	747 bp upstream
Tssr886	transcription start site region 886	894 bp upstream
Tssr29207	transcription start site region 29207	1503 bp downstream
Tssr29208	transcription start site region 29208	787 bp downstream
Tssr29209	transcription start site region 29209	621 bp downstream
Tssr29210	transcription start site region 29210	570 bp downstream
Tssr33349	transcription start site region 33349	1471 bp upstream
Tssr33350	transcription start site region 33350	903 bp upstream
Tssr33351	transcription start site region 33351	870 bp upstream
Tssr33352	transcription start site region 33352	843 bp upstream
Tssr33353	transcription start site region 33353	759 bp upstream
Tssr33354	transcription start site region 33354	734 bp upstream