rs31089182 SNP Detail

Summary

• ID
  rs31089182
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101261341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCACTTAA ATGTTTTCCT
  TTGTAAGAAG AGTTCTCTCC GTGGTGTCTC TTCACAGCAA CAGAAACCCC AAGTGAAGGA
  TGGAAAAAAG TGACACTCAG GAAGGGGAAT ACAGAGTATT TGCCCAGTCT CCGTGCTTTC
  TGAAGCTTTG AGCCTTTTCA TTCACAAGAA GTTGGGAGAG ATTTAACAGT GATTGAAAAA
  W
  AGCTAAGCTT GCCAGCTGAG CCACTGTTAT AATCAGACAC ATTTTGCCCA TTCTGACTCC
  CTTGACCATC TGTGACCAAA CCACGTTGAA AGCACCTGAT CTTGTCTGAT TTTACTCTGA
  CTTTTTTTTT TATTAATATA AAATTTTATT GGCATACACA GTGATAGTTT CAAAAGGATG
  TCATCACACA CGTACGTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45496265	mCV23815908	ABI	CRAMUS_MOUSE	f	SNP	T	T	A				T		T
ss46813895	NES10711785	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	A		A	T	T	T		A	T	A		A
ss135546724	ENSMUSSNP5684034	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						T
ss320851919	CHEV_3_101157948	CHEVERUD	SCREENING_POP	f	SNP												T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31089182					SNP	T	T	A	A	T	A	T	A	T	T	T	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813895	NES10711785	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101261341 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582017	regulatory region 582017	193 bp proximal
Rr582018	regulatory region 582018	431 bp proximal
Rr582019	regulatory region 582019	1529 bp proximal