rs31087659 SNP Detail

Summary

• ID
  rs31087659
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79794929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT CACACACACA CACACACACA
  S
  ACACAGACAC ACACACACAT ACACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45495748	mCV23428345	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss135376949	ENSMUSSNP4072433	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss320812431	CHEV_3_79691544	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31087659					SNP	G	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79794929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	931 bp distal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	805 bp upstream
Rr375226	regulatory region 375226	348 bp downstream
Rr578606	regulatory region 578606	1682 bp distal
Rr578607	regulatory region 578607	1247 bp distal
Rr578608	regulatory region 578608	319 bp distal
Rr578609	regulatory region 578609	749 bp distal
Rr578610	regulatory region 578610	709 bp distal
Rr578611	regulatory region 578611	339 bp proximal
Tssr29602	transcription start site region 29602	1620 bp downstream
Tssr29603	transcription start site region 29603	1558 bp downstream
Tssr29604	transcription start site region 29604	1501 bp downstream
Tssr29605	transcription start site region 29605	1413 bp downstream
Tssr29606	transcription start site region 29606	1395 bp downstream
Tssr29607	transcription start site region 29607	727 bp downstream
Tssr29608	transcription start site region 29608	667 bp downstream
Tssr33752	transcription start site region 33752	1449 bp upstream
Tssr33753	transcription start site region 33753	1384 bp upstream
Tssr33754	transcription start site region 33754	800 bp upstream