rs31087601 SNP Detail

Summary

• ID
  rs31087601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87665394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG GCCAGAGGGG CAAAAGCACG
  Y
  CCCACTCTTG GGATCACAGG AACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45496325	mCV25326027	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss135468161	ENSMUSSNP4525118	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss320835386	CHEV_3_87562009	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31087601					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87665394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pear1	platelet endothelial aggregation receptor 1			Coding-NonSynonymous
				Intron
				mRNA-UTR
				mRNA-UTR
Rr579538	regulatory region 579538			1946 bp distal