rs31086809 SNP Detail

Summary

• ID
  rs31086809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78502066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGGGATCC TGTAGCCAAT TAAATATACT ATTTACGCTT
  TCGGTCTCTG GAATCCCAAG GCAGAAACAA AGAAAGTGAG CACAGCTGTG TGCCAGTAGT
  Y
  ACATGGGCCT GTGCCCATTC TCAGAAGCCC CAGCGGGCCT GGGAAGCAGA TGACCCCAGC
  AAAAGAACTC TTCACACAGC GGGTGCTGAC TCTCCAGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45497101	mCV23542539	ABI	CRAMUS_MOUSE	f	SNP	T	T				T		C
ss47026145	NES10759765	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T		T	C	T	T		T	T	T		C
ss320807540	CHEV_3_78398681	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31086809					SNP	T	T	C	T	T	T	T	C	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026145	NES10759765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78502066 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	within coordinates
Rr578424	regulatory region 578424	177 bp proximal
Tssr33603	transcription start site region 33603	394 bp upstream
Tssr33604	transcription start site region 33604	340 bp upstream
Tssr33605	transcription start site region 33605	325 bp upstream
Tssr33606	transcription start site region 33606	310 bp upstream
Tssr33607	transcription start site region 33607	237 bp upstream
Tssr33608	transcription start site region 33608	142 bp upstream