rs31086398 SNP Detail

Summary

• ID
  rs31086398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146047959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACTATTT GATATAAATA
  AAGACAGGCA ATTTCCAGTA TGCTGTTTTC ACATAATCCA CTCAACCTTG ACTCTCATCC
  AGCACAGATC TTGGGGACTT ATGCAAATGT GAACAGGCTG CACCATGCCT GCTGCCTGAG
  TGAGTTCAGG AGCTGGAGGG TTGCTGTGTC AAATGGTCTC TGTTTGTAGT TCTGGATGCT
  R
  CGAGGTAATA GTGAGCTTTA GTTAATTACA CCTCGCATCA CCCCCAGGAG GTAGGTAATG
  ATTATAGGCG GACTTGGCTG AAGGAACTCA GAATGTCTTA ATAATCACTT AATAGAATCT
  TATCATGAGA AGCAAATTGC ATTAAATGGG CGAATGAAGT TGACTGTGAG AAACGAAGCC
  AGGAAATAAA ATGCTATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45496017	mCV24237056	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss136043367	ENSMUSSNP4073015	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss321009999	CHEV_3_146005168	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31086398					SNP	G	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146047959 () rs orientation: forward

Symbol	Name	Function Class
Rr587006	regulatory region 587006	1734 bp distal
Rr587007	regulatory region 587007	within coordinates
Rr587008	regulatory region 587008	1500 bp proximal
Rr587009	regulatory region 587009	1609 bp proximal