rs31086126 SNP Detail

Summary

• ID
  rs31086126
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34724691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA GCTCTCAGTC ACCGCAGCCC
  S
  GAGGGTGACT CTGCCCTGCC GGCGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44994391	mCV23105206	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	C
ss146343029	ENSMUSSNP6816637	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31086126					SNP	C	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34724691 () rs orientation: forward

Symbol	Name	Function Class
Rr394346	regulatory region 394346	1767 bp downstream
Rr546785	regulatory region 546785	13 bp distal
Rr546786	regulatory region 546786	within coordinates
Rr546787	regulatory region 546787	781 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	mRNA-UTR
Tssr156164	transcription start site region 156164	978 bp downstream
Tssr159005	transcription start site region 159005	176 bp upstream
Tssr159006	transcription start site region 159006	105 bp upstream
Tssr159007	transcription start site region 159007	72 bp upstream
Tssr159008	transcription start site region 159008	40 bp upstream
Tssr159009	transcription start site region 159009	within coordinates
Tssr159010	transcription start site region 159010	30 bp downstream
Tssr159011	transcription start site region 159011	143 bp downstream
Tssr159012	transcription start site region 159012	162 bp downstream
Tssr159013	transcription start site region 159013	192 bp downstream