rs31084343 SNP Detail

Summary

• ID
  rs31084343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141295088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTAAGAG AGGGACTTTG GGAATCTCTT CTCTCTTTAG
  CTATATGCAT GACCCTTTGA TTCTCATACC ATCCTACAAA AATAAGCTGG AAAAAAAAAT
  Y
  CCTCTGAAGT TTAAAGATGG TACTCAAGGG TAAAAAGGCT TGTCTACCTG GAGCTTGAGA
  AGCCTATTGA GAAAACTCAC CTAGAAAGGA GCTTCATAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45495911	mCV24102839	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136005333	ENSMUSSNP4192893	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C		C
ss320993575	CHEV_3_141252291	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31084343					SNP	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141295088 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			105 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant