rs31083254 SNP Detail

Summary

• ID
  rs31083254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127623227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAACTAA GCTCTGCAGC
  ATATCTGCAT GACTAGATAT GACGAACGTT CTGATCGCCT TTGATTTGTC CTCTATGTTT
  AATTCATCAG TTCCACAGCC GAAAACGCTG CCACACATCC AGTACTAAGT GTGCGGCTTT
  GAGGCTAAAC ATGCTCACTG TATATGTAAC GCCATTCCCA TAAGTGCTTC TGTACATAAG
  R
  CATGACTACA TCTTTCATAC CATTTTCACC AGACACTGGT AGTGGCTAGA ACTACTGTTG
  TAACGTAAGA GGGTCAGACT GTACAAAAGT TCCTGAATCT ATTTAAGAAA AAAAAAGTGC
  AAACCAGAAT AGAAGATCTG ATTTTTTTTT CTAGCATGCT TACAAGGGGA AAGCCTCAGT
  CCCTGTCTTC GTATTTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45496085	mCV23993984	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss135872300	ENSMUSSNP1076253	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss320957254	CHEV_3_127532496	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31083254					SNP	G	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127623227 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	641 bp proximal
Rr584872	regulatory region 584872	1231 bp proximal