rs31081567 SNP Detail

Summary

• ID
  rs31081567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87704243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG CTGGGCGAGG TCCCTGCCTT
  Y
  CTGCCCCACC AGCCGCGGCC GGTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45495562	mCV23486591	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss135468218	ENSMUSSNP2317106	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31081567					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87704243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13339	CpG island 13339	806 bp distal
Cpgi13340	CpG island 13340	within coordinates
Insrr	insulin receptor-related receptor	mRNA-UTR
Ntrk1	neurotrophic tyrosine kinase, receptor, type 1	1774 bp upstream
Rr579548	regulatory region 579548	1284 bp distal
Rr579549	regulatory region 579549	1667 bp distal
Rr579550	regulatory region 579550	1174 bp distal
Rr579551	regulatory region 579551	within coordinates
Tssr29830	transcription start site region 29830	42 bp downstream
Tssr29831	transcription start site region 29831	2 bp upstream
Tssr33956	transcription start site region 33956	1714 bp upstream